galaxy local install

Question: galaxy local install

4.6 years ago by

United States

I did try to install Galaxy locally in to my system and installed it successfully. I had some problems with my hard drive and have mistakenly deleted the galaxy dis folder. Now i tried to reinstall the galaxy again and it throws up some error saying address already in use etc., Can anyone help me with that

galaxy local install • 1.4k views

ADD COMMENT • link •

modified 4.6 years ago by Dannon Baker ♦ 3.7k • written 4.6 years ago by jaganlakshman • 10

I am getting the following error while reinstalling the galaxy

socket.error: [Errno 48] Address already in use

galaxy.jobs.handler INFO 2014-05-01 13:07:28,293 sending stop signal to worker thread

galaxy.jobs.handler INFO 2014-05-01 13:07:28,294 job handler queue stopped

galaxy.jobs.runners INFO 2014-05-01 13:07:28,294 LWRRunner: Sending stop signal to monitor thread

galaxy.jobs.runners INFO 2014-05-01 13:07:28,294 LWRRunner: Sending stop signal to 3 worker threads

galaxy.jobs.runners INFO 2014-05-01 13:07:28,294 LocalRunner: Sending stop signal to 5 worker threads

galaxy.jobs.handler INFO 2014-05-01 13:07:28,294 sending stop signal to worker thread

galaxy.jobs.handler INFO 2014-05-01 13:07:28,295 job handler stop queue stopped

Exception in thread JobHandlerQueue.monitor_thread (most likely raised during interpreter shutdown):

ADD REPLY • link written 4.6 years ago by jaganlakshman • 10

4.6 years ago by

Dannon Baker ♦ 3.7k

United States

Dannon Baker ♦ 3.7k wrote:

This indicates (most likely -- unless something else is using the port) that the previous galaxy installation is in fact still running. This is surprising if you deleted it, but you can check for sure (and kill the process) using something like:

`ps aux | grep paster`

In a terminal. If you see something like './scripts/paster.py serve universe_wsgi.ini' anywhere, then galaxy is still running. That command's output looks something like:

dannon         49926   0.0  0.2  2460704  19080 s002  S+    1:11PM   0:00.38 /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python ./scripts/paster.py serve universe_wsgi.ini --reload

Look at the process id there (the second column) and then execute kill <process_id>. So, given the above output, I'd execute:

`kill 49926`

ADD COMMENT • link written 4.6 years ago by Dannon Baker ♦ 3.7k

4.6 years ago by

Martin Čech ♦♦ 4.9k

United States

Martin Čech ♦♦ 4.9k wrote:

You probably have the first Galaxy instance still running. Try rebooting.

ADD COMMENT • link written 4.6 years ago by Martin Čech ♦♦ 4.9k

Please log in to add an answer.

Similar posts • Search »