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Question: Blast On Galaxy?
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gravatar for Jorge Braun
5.0 years ago by
Jorge Braun • 70
Jorge Braun • 70 wrote:
hello users, 😊 My name is J.Braun and I am a new user of galaxy... It is a great tool for biologists. I have some questions and I would appreciate you could help me. 1) can I make a blast in Galaxy? 2) If so, can I download blast in galaxy? 3) If so, can I set up blast in my galaxy for analysis with only a particular species? Thank you very much
galaxy • 1.7k views
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modified 5.0 years ago by Björn Grüning • 350 • written 5.0 years ago by Jorge Braun • 70
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gravatar for Björn Grüning
5.0 years ago by
Björn Grüning • 350
Björn Grüning • 350 wrote:
Hi Jorge, Yes! Yes! Yes! But you need a local Galaxy instance, or a Galaxy instance where you can convince the administrator to install the Blast Tools. To install the Blast tools you can use the Tool Shed: http://wiki.galaxyproject.org/Tool%20Shed Here is the repository: http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus You can put arbitrary blast databases into Galaxy (have a look at the location files - *.loc), you also can create your own databases with Galaxy and search against that. Cheers, Bjoern
ADD COMMENT • link written 5.0 years ago by Björn Grüning • 350
Thanks Björn for the information and the links :) I'm going to investigate galaxy and see if I can resolve the doubts. Cheers, Jorge
ADD REPLY • link written 5.0 years ago by Jorge Braun • 70
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