Question: Blastn: Nameerror: Name 'Cmd' Is Not Defined
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gravatar for Sergei Ryazansky
7.4 years ago by
Sergei Ryazansky40 wrote:
Hello all, First of all I would like to thank you guys for developing and mainting this so useful tool as Galaxy! I have our own installation fo Galaxy (galaxy-dist version) with ncbi-blast-plus. Calling blastn results to the following error message: An error occurred running this job:*Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py", line 29, in <module> sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err)) NameError: name 'cmd' is not defined* * * Could you please explain, what this error can mean? The link to the shared history is* * http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast* * * * Thank you in advance!
galaxy • 1.3k views
ADD COMMENTlink modified 7.4 years ago by Kanwei Li270 • written 7.4 years ago by Sergei Ryazansky40
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gravatar for Kanwei Li
7.4 years ago by
Kanwei Li270
Kanwei Li270 wrote:
Hi Sergei, This is a bug in the script, I will ask Peter, the author, to look into it. Thanks! K
ADD COMMENTlink written 7.4 years ago by Kanwei Li270
Thanks for answer, but I have just updated the galaxy source code and blastn works fine! Sorry for any inconvenience :) 30.06.2011 22:53, Kanwei Li пишет:
ADD REPLYlink written 7.4 years ago by Sergei Ryazansky40
It was an error in the wrapper script's error handler, already fixed. Peter
ADD REPLYlink written 7.4 years ago by Peter Cock1.4k
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