Question: Cleanup_Datasets.Py With Postgresql 8.1
0
Malcolm Tobias • 10 wrote:
All,
My understanding is that the cleanup_datasets.py under
scripts/cleanup_datasets should be compatible with 'older' versions of
postgresql. I'm running 8.1 under CentOS 5. When I attempt to run
the scripts, it fails to clean any data sets. From the logs, I'm
noticing messages like:
database_connection contains an unknown SQLAlchemy database dialect:
postgresql
In my universe_wsgi.ini I've defined the database_connection as:
database_connection =
postgresql://galaxy:********@localhost:5432/galaxydb
and am confident it's working as Galaxy works fine, other than this
problem with deleting older datasets.
The pgcleanup.py script isn't an option, as it requires postgresql
>=9.1. I noticed yet another version of cleanup_datasets.py under
cron which looks like it might be compatible with postgres, but am
leary of trying it as I'm not sure what it means by "1: database
directory to clean". I'm not sure what directory to point this to,
nor am I confident that just deleting data from the directory is the
safest thing.
Any suggestions on how to proceed?
Thanks!
Malcolm
--
Malcolm Tobias
314.362.1594
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modified 5.2 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
5.2 years ago by
Malcolm Tobias • 10
