Question: Problems Getting Galaxy AMI to Run
0
gravatar for qspencer
2.6 years ago by
qspencer • 0
United States
qspencer • 0 wrote:

Following the instructions at https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted I can't get the referenced ami:

AMI: ami-b45e59de
Name: Galaxy-CloudMan-1457720469 (active dates: 2016-03-24 -> present)

to run. There seem to be multiple start-up errors. I'm seeing errors with Postgres and NodeJSProxy service:

19:27:04 - Successfully grew file system galaxy FS
19:27:07 - NodeJSProxy service prerequisites OK; starting the service.
19:27:07 - Fault starting supervisord prog:
19:27:13 - Postgres service prerequisites OK; starting the service.
19:27:23 - ---> PROBLEM, running command '/bin/su - postgres -c "/usr/lib/postgresql/9.3/bin/pg_ctl -w -D /mnt/galaxy/db -l /tmp/pgSQL.log -o\"-p 5930\" start"' returned code '1', the following stderr: 'pg_ctl: could not start server Examine the log output. ' and stdout: 'waiting for server to start.... stopped waiting '

When I check the postgres log I find:

FATAL:  database files are incompatible with server                                                                                                                         
  2 DETAIL:  The data directory was initialized by PostgreSQL version 9.1, which is not compatible with this version 9.3.11

After that it goes into an infinite loop trying to start the NodeJSProxy:

19:43:49 - NodeJSProxy service prerequisites OK; starting the service.
19:43:49 - Fault starting supervisord prog:
19:44:05 - NodeJSProxy service prerequisites OK; starting the service.
19:44:05 - Fault starting supervisord prog:
19:44:20 - NodeJSProxy service prerequisites OK; starting the service.
19:44:20 - Fault starting supervisord prog:

Is this AMI known to be non-functional?

ami • 757 views
ADD COMMENT • link • modified 2.5 years ago • written 2.6 years ago by qspencer • 0

Are you launching the instance from launch.usegalaxy.org/launch ?

ADD REPLY • link written 2.6 years ago by Mo Heydarian ♦ 830
2
gravatar for Mo Heydarian
2.5 years ago by
Mo Heydarian ♦ 830
United States
Mo Heydarian ♦ 830 wrote:

Try launching Cloudman from launch.usegalaxy.org/launch. From here you just need to enter your AWS credentials (access and secret keys), name your cluster, and enter a password. Then you're ready to launch by clicking "Create a cluster". This is simpler than following the (outdated) wiki.

ADD COMMENT • link written 2.5 years ago by Mo Heydarian ♦ 830
0
gravatar for qspencer
2.6 years ago by
qspencer • 0
United States
qspencer • 0 wrote:

No, as noted in my original post I followed the instructions here: https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted

ADD COMMENT • link written 2.6 years ago by qspencer • 0

Just to let you know, our wiki is under the process of an upgrade. This and other outdated information/help will be reorganized and updated as part of this process.

ADD REPLY • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k

This is the current Getting Started guide: https://wiki.galaxyproject.org/CloudMan/GettingStarted How did you arrive at the one you used (we need to remove those links as the information there is clearly outdated)?

ADD REPLY • link written 2.5 years ago by Enis Afgan • 690
0
gravatar for qspencer
2.5 years ago by
qspencer • 0
United States
qspencer • 0 wrote:

I believe it was via a Google search. It would be great if you could just remove any outdated information.

Thanks for the link to the current Getting Started page!

Quentin Spencer

ADD COMMENT • link written 2.5 years ago by qspencer • 0
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