Question: Delete Data Library Manually
gravatar for Jean-Baptiste Denis
7.9 years ago by
Jean-Baptiste Denis20 wrote:
Hello everybody, i'm a sysadmin in charge of installing a Galaxy server. I'm a totally beginner regarding this software. I've installed Galaxy using the documentation on the wiki (with Apache as a proxy and postgresql as database) and everything went fine. I've tried to create a new library as a galaxy admin. I've added a dataset using "Upload files from filesystem paths" without copying data into galaxy. To test the behaviour of Galaxy in a weird situation i've added "/" (:D), clicked on "Upload to library" and closed the navigation tab after one minute. As a result, the new data library appears under the "Manage data libraries" page. But, when i click on it, i've got a server error. Here is the traceback : .... File '/home/galaxy/galaxy-dist/database/compiled_templates/library/common/b', line 229 in render_render_content if not library, contents=True ): File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/', line 541 in library_is_public File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/', line 559 in folder_is_public File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/', line 559 in folder_is_public File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/', line 559 in folder_is_public File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/', line 562 in folder_is_public AttributeError: 'NoneType' object has no attribute 'dataset' My question is : how can i delete this library without messing with the database consistency? Any hints ?
galaxy • 1.2k views
ADD COMMENTlink modified 7.9 years ago by Greg Von Kuster810 • written 7.9 years ago by Jean-Baptiste Denis20
gravatar for Greg Von Kuster
7.9 years ago by
Penn State University
Greg Von Kuster810 wrote:
Hello Jean-Baptiste, Thanks very much for bringing these issues to our attention. In change set 4860:d7162c6046fb, we've added exception handling around displaying a data library so an error message is displayed rather than the server error. We have also added the ability for an admin user to delete / undelete data libraries when browsing all data libraries ( these operations can be performed on 1 or more data libraries simultaneously ). This change set should make it to the distribution within the next few weeks, or you can pull directly from our development repo at Greg Von Kuster Greg Von Kuster Galaxy Development Team
ADD COMMENTlink written 7.9 years ago by Greg Von Kuster810
Thank you for your feedback ! Regards, Jean-Baptiste
ADD REPLYlink written 7.9 years ago by Jean-Baptiste Denis20
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