Similar posts • Search »

• Display At Ucsc Error
  Hey there, I am trying to add a custom track of a bed file through Galaxy and i keep getting thi...
• Trying to see data from modMine in Galaxy
  I wish to visualise Chip-Seq data that are stored in Modmine. I have first downloaded a GFF3 file...
• Error of wig/BedGraph-to-bigWig converter
  Hi, I have a ChIP-Seq BAM file aligned on the chicken galGal3 reference genome using Bowtie2. I ...
• Simplejson Reimport Error
  /home/www/galaxy/lib/galaxy/eggs/__init__.py:529: UserWarning: Module simplejson was already impo...
• ChiP Seq Track height and scaling in UCSC Browser
  Hi all, I recently work on several ChIP-seq data sets. My traditional workflow is .fastq/.fastq....
• Bedgraph to bigwig: Matched on Error
  Hello Biostars, I've been encountering this error with the bedGraphToBigWig tool Wig/BedGraph-to...
• Intallation problem on centos 7.0
  Hi there!! I try to install galaxy on a server cifs: Here is the error I obtain: > [maurizio@...
• Cufflinks Error With Illumina Igenome .Gtf For Annnotation
  Hi all, I am attempting to use tophat>cufflinks>cuffmerge>cuffdiff to compare transcri...
• an error when trying the example in tutorial (Galaxy 101)
  I am trying the example by joining the exons and SNPs from UCSC. An error always be returned. I d...
• Error in local Galaxy's "display at UCSC main" command
  Hi all I have a BAM file uploaded I want it to be visualize over at UCSC Genome Browser through ...
• Cufflinks Output In Ucsc Browser
  Hi all, I am doing cufflinks assembly of TopHat-aligned NGS reads with Refseq gene track as refe...
• Collect Alignment Summary Metrics won't run?
  Hi all, I am trying to run Collect Alignment Summary Metrics on my RNA Seq data and every time i...
• Pulsar gives "[Errno 2] No such file or directory:" for data managers and UCSC Get Data
  Dear Galaxy biostar users, Our cluster is configured in such a way that Pulsar distributes the j...
• Displaying Ucsc Tracks When Using External Auth
  Hi All, When attempting to display a custom track on the UCSC genome browser, galaxy generates a...
• Is && needed in xml for seperating lines?
  Hi. I see an example here https://docs.galaxyproject.org/en/latest/dev/schema.html that **&&a...
• Fw: [Galaxy-Bugs] Galaxy Tool Error Report From Bsib@Leeds.Ac.Uk
  Hi Jen, thanks. I am a bit confused: on Galaxy the only human genome listed is hg_g1k_v37. So w...
• Displaying Macs Peaks At Ucsc
  Hello, I am new to Galaxy and am trying to analyze some ChIP-Seq data. I groomed illumina FASTQ ...
• htseq-count issues with Deseq2
  This is the first time im trying this but I keep running into issues. I'm running the htseq-count...