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Question: Cufflinks Output In Ucsc Browser
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gravatar for Aleks Schein
7.4 years ago by
Aleks Schein • 60
Aleks Schein • 60 wrote:
Hi all, I am doing cufflinks assembly of TopHat-aligned NGS reads with Refseq gene track as reference annotation. All works, but resulting gtf files cannot be displayed in UCSC browser. I use "display at UCSC main" link, but get a message:"Error 500: Internal Server Error". Has anyone experienced this problem recently? regards, Aleks
rna-seq cufflinks • 1.0k views
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modified 7.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.4 years ago by Aleks Schein • 60
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gravatar for Jennifer Hillman Jackson
7.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Aleks, Without seeing your history, I guess would be that you need to assign a reference genome and then confirm that that reference genome is available at UCSC. If none of this seems to be the case with your issue, please send a shared history link and we can take a look. To share a link, from the right top of the history pane, use "Options" -> Share or Publish, create the share link, and email it back directly to me. Thanks! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org/ http://galaxyproject.org/
ADD COMMENT • link written 7.4 years ago by Jennifer Hillman Jackson ♦ 25k
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