Question: Clip Doesn'T See My Fastq File
gravatar for Stephen Eacker
6.0 years ago by
Stephen Eacker30 wrote:
Hello, I'm using Galaxy on the PSU server. I uploaded a FASTQ file that I want to run the Clip Adapter Tool, but this tool does not see my FASTQ file in the 'Library to clip' drop-down. I have successfully run FASTQC on this same file, so Galaxy does properly see this file as being a FASTQ file. Any thoughts? thanks, Steve Stephen Eacker, Ph.D. Research Associate Dawson Lab Institute for Cell Engineering Johns Hopkins Medical Institute (443) 287-5605
galaxy • 873 views
ADD COMMENTlink modified 6.0 years ago by Jennifer Hillman Jackson25k • written 6.0 years ago by Stephen Eacker30
gravatar for Jennifer Hillman Jackson
6.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Steve, Are you still having problems with this tool? And the datatype is assigned as ".fastq" or ".fastqsanger"? If you would like to send a shared link to the history, I can take a look and give feedback. From the history panel, use: Options (gear icon) -> Share or Publish - > generate a share link -> then copy that into a return email to just me (to keep your data private). Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.0 years ago by Jennifer Hillman Jackson25k
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