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• Problem with Plotting tool
  I need to make a rarefaction curve and i´m want to to this: Plotting tool with the followin...
• Galaxy cummeRbund fails to identify sample name for X and Y axis for scatter and volcano plot
  Hello, I have cuff diff sqlite db for 2 samples and I wish to visualise the result using galaxy-c...
• Dot plot between two sequences
  Hi All, Is there any tool to plot dot plot between two sequences such that each sequence will li...
• Mapping quality plot of BAM file
  I'm interested in a specific genome region, is there a way/tool to make trackster track/plot/hist...
• Analysing paired end RNAseq data with poor quality score
  Hello, I'm new in NGS and i'm currently working on RNA-seq. I had 6G of illumina reads and proce...
• Wrong axis labelling of CummeRbund scatter plot
  Hi all, I am plotting my CuffDiff results in a scatter plot using CummeRbund. Without log10 tran...
• Error with Filter tool from galaxy
  I new user in galaxy, so a i'm having a problem with it  I'm analysing NGS Data, so: 1 - I uplo...
• Help with CummeRbund graphs
  Hello everybody, I´m doing a RNAseq analysis but when I will do a scatter plot or volcano plot I...
• Fastq Groomer And Compute Quality Statistics
  I noticed that for our new Ilumina data (which generate Sanger format) the FastQ groomer output i...
• Plotting Density Of Snps On Chromosomes
  Dear All, I would like to make a graph in which I can compare SNPs of samples for each chromosom...
• Fastqc Issue With Per Base Nucleotide Quality Graph
  Hi, I am having a problem with FastQC. When I view per base quality, it gives me a strange looki...
• November 24, 2010 Galaxy Development News Brief
  November 24, 2010 Galaxy Development News Brief Here are the highlights of the following upgrade...
• How To Show Sequence Length Data
  Hi, there I'm new to this field and have a question when using Galaxy. I have RNA sequence data....
• How to visualize Bam Files normalize
  I have my DamID data (corrected by GATC fragments). I have two bams for Dam alone protein (the co...
• PEAR alternative for merging overlapping paired-end reads using Galaxy tools
  Hello! I typically use PEAR to merge my two overlapping paired-end reads for one high quality re...
• Fw: Change Format With "Edit Attributes"
  Hi Peter, Thank you for your fast answer. I just want to know how can I use output files from B...
• sum all but first 500 lines
  I'd like to make a genome coverage distribution plot using the X-Y plotting tool X = coverage de...