Similar posts • Search »

• Problems with Map with BWA for Illumina and SAM-to-BAM today
  Today I am having problems with several tools. Map with BWA for Illumina is failing with the err...
• Symbolic Link To Bowtie
  Hi, I am running Galaxy locally (Ubuntu 11.04) and I am getting this error message when I try ...
• HISAT2 input to StringTie with UCSC mm10 or ncbi refseq GTF produces error message
  Hi, there, rerun HISAT2, tried to run Stringtie for TPM, when running only HISAT results as i...
• import data from filesystem into the library without copying it
  Under Admin I created a linked dataset for file > 2GB. The Galaxy message says "This job is r...
• HTML page output in history - no css gets loaded
  Hello, My pipeline produces an html report with links to other html pages. I have integrated thi...
• Data upload to Galaxy Fails
  Hi! I am trying to upload a tab-delimited file for LEfSe on Galaxy.  However, all my attempts ge...
• Password Reset Not Working
    Hello, I am trying to reset my password. I am able to request a reset, however, when I attemp...
• Loading Neurospora Crassa Genome Database Onto Galaxy.
  Hi, I'm working on the filamentous fungi, Neurospora crassa and would like to use Galaxy to do s...
• Galaxy website unreachable
  Greetings, I currently have a big issue with the galaxy website. I can access to this link 'htt...
• Stderr On Samtools Sort
  Dear all, I'm trying to set up samtools sort command on local Galaxy server. But I can not succe...
• Do i need to make history accessible for download "Export history to File"?
  Hi, I'm rather new to galaxy and I'm confused with documentation. I'm attempting to download wh...
• An error systematiquely occurs with LastZ
  Hi, Would you be aware of any issue with LastZ ? Here is the error message that I get when I ...
• Data From History Now Showing Up In Fastq Drop Down
  Hi All, We have a galaxy local install. Thanks to Carlos's suggestion, I was able to get the ref...
• Fwd: Hcc Analysis Pipeline
  Hi Moritz, I'm forwarding your message to galaxy-user mailing list and Jennifer from Galaxy. Betw...
• Cuffdiff-output-couldnot find fasta record for a scaffold
  Dear Galaxy team When i ran cuffdiff for my merged transcripts file using a custom reference gen...
• Loading human hg38 onto local instance
  Dear Galaxy Team I have a Galaxy Instance loaded onto my computer and have been trying to create...
• Bowtie2
  Hi All I'm trying to use bowtie2 in Galaxy but though I have uploaded a valid pair of fastq file...
• Help With Sam To Bam (Zachary A Lewis)
  Message: 1 Date: Tue, 13 Sep 2011 18:32:43 +0000 To: "galaxy-user@lists.bx.psu.edu" Subject: [...
• Gatk
  Dear happy users of Galaxy, We are running Galaxy locally. It's a very fine tool! By now everyt...
• How to configure cloud launch app for aws?
  Hello. I am new to AWS and Galaxy, though I'm comfortable with technology. I am trying to set up ...
• Cannot Send Error Report
  Every time I try to send an error report and get some info on the error, I get this message: An ...
• Updating account credentials including email and password
  I changed institutions and no longer have access to the email I used to set up my Galaxy account....