Question: Running Gops_Cluster.Py On The Command Line Fails
0
Daniel Gerlach • 10 wrote:
Dear Galaxy Team,
I followed the instructions and downloaded the Galaxy distribution
according to the WIKI. As I do want to run some specific tools locally
on the shell, I put import sys and
sys.path.append("/somedir/galaxy/lib") before the galaxy module is
loaded.
However the tool seems not to work and still gives me some errors
which
I can not figure out. I'd be thankful for some ideas.
$ python /somedir/galaxy/tools/new_operations/gops_cluster.py
Traceback (most recent call last):
File
"/home/cegg/gerlach/bin/galaxy/tools/new_operations/gops_cluster.py",
line 22, in ?
from galaxy.tools.util.galaxyops import *
File "/home/cegg/gerlach/bin/galaxy/lib/galaxy/tools/__init__.py",
line 16, in ?
from galaxy.util.template import fill_template
File "/home/cegg/gerlach/bin/galaxy/lib/galaxy/util/template.py",
line 2, in ?
pkg_resources.require( "Cheetah" )
File "/home/cegg/gerlach/bin/galaxy/lib/galaxy/eggs/__init__.py",
line 544, in require
sys.path.remove(entry)
ValueError: list.remove(x): x not in list
With best regrads, Daniel
--
Daniel Gerlach, PhD student
Computational Evolutionary Genomics Group (CEGG)
email: daniel.gerlach@unige.ch
www: http://cegg.unige.ch/