Tool working on Galaxy v17 but give error on Galaxy v16

Question: Tool working on Galaxy v17 but give error on Galaxy v16

12 months ago by

vebaev • 130

vebaev • 130 wrote:

Hi, I have installed some tools from the package Qiime on two local Galaxy instances with a successfully green installed label. Nevertheless on a Galaxy v17 it is working and the same tool on a Galaxy v16 give error:

Fatal error: Exit code 1 ()
Traceback (most recent call last):
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/bin/split_libraries_fastq.py", line 4, in <module>
    __import__('pkg_resources').run_script('qiime==1.9.1', 'split_libraries_fastq.py')
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3142, in <module>
    @_call_aside
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3126, in _call_aside
    f(*args, **kwargs)
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3155, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/export/galaxy-central/database/job_working_directory/000/774/conda-env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 867, in resolve
    raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'pytz>=2011k' distribution was not found and is required by pandas

Did someone know how to fix this? Thanks!

16 17 qiime galaxy • 366 views

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modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by vebaev • 130

12 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Several changes and bug fixes have been made for this dependency. The tools may not work in earlier versions of Galaxy. Examples: https://github.com/galaxyproject/galaxy/search?q=pytz

If you are using the IUC versions of the tools, you could ask them directly if there is a known solution at their Gitter channel (requires a Github account): https://gitter.im/galaxy-iuc/iuc

Hope that helps! Jen, Galaxy team

ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k

Strange, I have upgraded my Galaxy to the latest v17, and the error persists. How is possible to add the missing distribution from the error manually or somehow fix this?

ADD REPLY • link written 12 months ago by vebaev • 130

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