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Question: NotFound: cannot find 'cluster'
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gravatar for harryln
12 months ago by
harryln • 10
harryln • 10 wrote:

Hi, I run my tool and get this error massage:

Traceback (most recent call last):
  File "/home/wl/galaxy/lib/galaxy/jobs/runners/__init__.py", line 170, in prepare_job
    job_wrapper.prepare()
  File "/home/wl/galaxy/lib/galaxy/jobs/__init__.py", line 864, in prepare
    self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build()
  File "/home/wl/galaxy/lib/galaxy/tools/evaluation.py", line 454, in build
    raise e
NotFound: cannot find 'cluster'

But the command in my tool script has nothing to do with cluster. Does anyone know this problem?

PS: I use format="data" for one of inputted binary data. Does it lead to this problem?
development tool local galaxy datatype • 312 views
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modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by harryln • 10
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gravatar for Jennifer Hillman Jackson
12 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Check to make sure the required inputs are in the right format and labeled with the correct datatype. If this is your tool and your own Galaxy, you may need to create a new datatype: https://galaxyproject.org/admin/datatypes/adding-complete-datatypes/

The data datatype is a fall-back for plain text datasets that do not have a specific format/datatype defined - so binary input assigned to that type could certainly trigger a problem/error. You will probably need to update your tool to require that new datatype in the input select area of the associated tool xml/py to use it properly.

Hope that helps! Jen, Galaxy team
ADD COMMENT • link modified 12 months ago • written 12 months ago by Jennifer Hillman Jackson ♦ 25k
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