Could you give some tips for solve this error, please? All dependencies are installed, and samtools is in bin/sh indeed. We don't have idea what is going wrong. We had already try to reinstall packages and dependencies, change the path and more...
Traceback (most recent call last): File "/home/biostack/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 118, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) File "/home/biostack/galaxy-dist/lib/galaxy/jobs/__init__.py", line 963, in finish dataset.datatype.set_meta( dataset, overwrite=False ) # call datatype.set_meta directly for the initial set_meta call during dataset creation File "/home/biostack/galaxy-dist/lib/galaxy/datatypes/binary.py", line 251, in set_meta raise Exception, "Error Setting BAM Metadata: %s" % stderr Exception: Error Setting BAM Metadata: /bin/sh: 1: samtools: not found
Thanks and regards,