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Question: Request For A New Genome (Aedes Aegypti)
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gravatar for Laurence Després
6.4 years ago by
Laurence Després • 10
Laurence Després • 10 wrote:
Dear Galaxy team, I would like you to add in the insect genomes available in Galaxy the genome of Aedes aegypti which is available in Vectorbase (http://aaegypti.vectorbase.org/), Thank you, Laurence Després -- Laurence Després Laurence Després Equipe Bases Génétiques de l'adaptation (GBA) Laboratoire d'Ecologie Alpine (LECA) UMR CNRS 5553 Université J. Fourier Domaine universitaire de Saint Martin d'Hčres 2233, rue de la piscine Bât. D BiologieBP 53, 38041 Grenoble Cedex 9, France laurence.despres@ujf-grenoble.fr <mailto:laurence.despres@ujf- grenoble.fr=""> Tel: 33 (0)4 76 63 56 99 Fax: 33 (0)4 76 51 42 79 http://www2.ujf-grenoble.fr/leca/ Master2R Biodiversité-Ecologie-Environnement (BEE) http://www-biologie.ujf-grenoble.fr/SiteBio/ <http: www-biologie.ujf-="" grenoble.fr="" sitebio="" articles.php?lng="fr&amp;pg=280">
galaxy • 598 views
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modified 6.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.4 years ago by Laurence Després • 10
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gravatar for Jennifer Hillman Jackson
6.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Laurence, The genome "Mosquito (Aedes aegypti) (AaegL1)" is already included in Galaxy as a native genome. To location the genome, type part of the name, I used parts of both the common name "mos" and the scientific name "aeg" and found the genome on the "Edit attributes" page (pencil icon) and on tool forms (Bowtie, BWA, TopHat). "AaegL1" is the latest "genome build". There are more recent "gene builds", but these refer to annotation, not reference sequence. If you wish to use the most current "gene build annotation" information, this appears to be available through Biomart, which means that the Galaxy "Get Data -> Biomart" tool can be used to import the datasets directly for use with tools. Hopefully this helps, Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENT • link written 6.4 years ago by Jennifer Hillman Jackson ♦ 25k
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