Question: Annotation Tool For Prokaryotic Genome
gravatar for Bernardo Bello
6.1 years ago by
Bernardo Bello40 wrote:
Hello Galaxy community, I would like to know if there is any available tool in Galaxy for automated gene annotation. I need gene annotation in GTF or GFF3 format to run CuffDiff on a RNA-Seq project that we are. If not, do you recommend me any software or utility. We have the genome annotated in GenBank format, but searching in the web I've seen that is not possible to convert GenBank format to GTF or GFF3. I appreciate your opinions. Thank you, Bernardo -- *Bernardo Bello Ortí* Becario predoctoral FPI CReSA-IRTA Campus de Bellaterra-Universitat Autňnoma de Barcelona Edifici CReSA 08193 Bellaterra (Barcelona) Tel.: 647 42 52 63 * * * *
gff • 905 views
ADD COMMENTlink modified 6.1 years ago by Björn Grüning350 • written 6.1 years ago by Bernardo Bello40
gravatar for Björn Grüning
6.1 years ago by
Björn Grüning350 wrote:
Hi Bernardo, We have a tool, that annotates your prokaryotic genome, through similarity searches and creates a genbank file afterwards ... Is that what you are searching for? I think its possible. I have a 'GenBank / embl converter to GFF' and vice versa converter here. I will try to pack it and send it tomorrow when im back at work. Cheers, Bjoern
ADD COMMENTlink written 6.1 years ago by Björn Grüning350
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