Question: Error Running Ccat Test
0
Nicolas Lapalu • 10 wrote:
Hi,
I tried to run CCAT functionnal test, but I get an exception (same
problem via web form)
Data are well associated with the hg18 build, which is available in
test-data/chrom/hg18.len
Error running CCAT.
Traceback (most recent call last):
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line
41,
in <module>
if __name__ == "__main__": main()
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line
38,
in main
return stop_err( tmp_dir, e )
File "/home/galaxy-dev/tools/peak_calling/ccat_wrapper.py", line
13,
in stop_err
raise exception
AssertionError: The required chromosome length file does not exist.
Any Idea ?
Thanks, Nicolas
--
Nicolas Lapalu
INRA - URGI, Bat. 18
Route de Saint Cyr 78000 Versailles
Tel: +33 (0)1 30 83 38 10 - Fax: +33 (0)1 30 83 38 99
nicolas.lapalu@versailles.inra.fr
http://urgi.versailles.inra.fr/
http://www.versailles-grignon.inra.fr/bioger
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modified 5.0 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
5.0 years ago by
Nicolas Lapalu • 10
