Suggestion For Galaxy

Question: Suggestion For Galaxy

12.7 years ago by

Penn State

Subject: suggestion for galaxy Date: Wed, March 15, 2006 6:56 am To: "Anton Nekrutenko" <anton@bx.psu.edu> Cc: "France Denoeud" <fdenoeud@imim.es> Hi Anton, here's an important feature galaxy should have, in our opinion: a 'restore deleted item' capability. E.g. the 'delete' link available for each history item should be a 'send to trash' instead. The user's trash should be easily accessible from the interface , 'empty-able' by the user, and emptied by your server e.g. every 2 days or so. thank you! j -- Julien Lagarde Genome Bioinformatics Research Group GRIB/IMIM Pg. Maritim de la Barceloneta 37-49 E-08003 BARCELONA - Spain Tel: +34 93 224 0886

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modified 12.7 years ago by Julien Lagarde • 40 • written 12.7 years ago by Anton Nekrutenko ♦ 1.7k

12.7 years ago by

Istvan Albert ♦ 250

University Park

Istvan Albert ♦ 250 wrote:

Hello Julien, Do you think that this feature is needed because it is easy to accidentally delete items, or because the history gets too crowded when there are too many items on it. And then there is an urge to clean it up to make it more tractable, but it turns out later that the deleted item might have been needed again. Either way it should be straightforward to implement this feature, and we'll get on it. Istvan -- Istvan Albert, Research Associate, Bioinformatics Consulting Center, Huck Institute for Life Sciences, Pennsylvania State University http://www.personal.psu.edu/iua1

ADD COMMENT • link written 12.7 years ago by Istvan Albert ♦ 250

Hi Itsvan, i was talking about accidental deletions. but now that you raise the issue, maybe it would also be nice to be able to group whatever related history items into 'folders' (also viewable in the history pane) to clear the view. don't know if i'm clear... if not just tell me. cheers j -- Julien Lagarde Genome Bioinformatics Research Group GRIB/IMIM Pg. Maritim de la Barceloneta 37-49 E-08003 BARCELONA - Spain Tel: +34 93 224 0886

ADD REPLY • link written 12.7 years ago by Julien Lagarde • 40

12.7 years ago by

Julien Lagarde • 40

Julien Lagarde • 40 wrote:

Hi Anton, amazingly i was just about to send you the 'user account' suggestion ;-) does that mean that when sharing a history with other people, the history owner would be able to set basic read/write access to it? that would be very useful! i have another suggestion: when creating a new history item with the left-pane tools, and then editing its attributes to make it more human-readable, would it be possible to keep its original attributes somewhere? for instance: 1- i subtract gencode exons from my est alignments 2- i rename the output to 'ESTs not overlapping gencode exons' 3- i do whatever operation on 'ESTs not overlapping gencode exons'. let's say it gives me weird results, so i want to check if i did the right thing at step 1. AFAIK this is impossible right now. see what i mean? cheers j -- Julien Lagarde Genome Bioinformatics Research Group GRIB/IMIM Pg. Maritim de la Barceloneta 37-49 E-08003 BARCELONA - Spain Tel: +34 93 224 0886

ADD COMMENT • link written 12.7 years ago by Julien Lagarde • 40

Caiti: I am forwarding your e-mail to galaxy-user list. To answer your question - you will soon be able to upload tarred gzipped datasets that may contain multiple files. a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

ADD REPLY • link written 8.6 years ago by Anton Nekrutenko ♦ 1.7k

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