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Question: Customize Annotated Refgenome In Galaxy
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gravatar for Anton Nekrutenko
7.2 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:
Qiang: I'm reposting this question to the galaxy-user mailing list. Thanks! anton
galaxy • 653 views
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modified 7.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.2 years ago by Anton Nekrutenko ♦ 1.7k
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gravatar for Jennifer Hillman Jackson
7.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Qiang, The best solution is to use the fasta version of the reference genome when running the Galaxy analysis tools and then link back in the annotation as needed using the tool "Join, Subtract and Group -> Column Join". This would require you to covert/load the genbank .gb data in tabular format and possibly to use some of the tools in "Text Manipulation". Galaxy currently does not have a genbank .gb file converter, but a quick web search brings up several options for you to choose from. We hope this helps to get you started, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENT • link written 7.2 years ago by Jennifer Hillman Jackson ♦ 25k
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