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Question: Operate On Genomic Intervals: Join
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gravatar for Stephen Eacker
7.1 years ago by
Stephen Eacker • 30
Stephen Eacker • 30 wrote:
Hello, I using operate on genomic intervals on some data and it always seems to ignore the strand information. Am I missing something or does "operate of genomic intervals" disregard strand information? Is there a tool that does the inner join function and takes into account strand information? thanks, Steve Stephen Eacker, Ph.D. Postdoctoral Fellow Dawson Lab Institute for Cell Engineering Johns Hopkins Medical Institute (443) 287-5605 seacker1@jhmi.edu
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modified 6.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.1 years ago by Stephen Eacker • 30
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gravatar for Jennifer Hillman Jackson
6.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Steve, Yes, this is true, many of the Interval Operations tools do not interpret strand. Meaning that you would need to first filter the data by strand, then perform the operation per strand to obtain an inner join result. Help, including links to screencasts: http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENT • link written 6.9 years ago by Jennifer Hillman Jackson ♦ 25k
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