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Question: Map With Bowtie For Illumina (Version 1.1.2)
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gravatar for KNIGHT M.R.
7.1 years ago by
KNIGHT M.R. • 30
KNIGHT M.R. • 30 wrote:
Hi, is it possible to run Map with Bowtie for Illumina (version 1.1.2) in -v alignment mode/ If so, what settings do I need to enter? Many thanks, Marc. *** Professor Marc R. Knight, Director, Durham Centre for Crop Improvement Technology, School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE. Tel: +44 191 33 41224 Fax: +44 191 33 41201 Website: http://www.dur.ac.uk/dccit/ ***
alignment bowtie • 723 views
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modified 7.1 years ago by Dannon Baker ♦ 3.7k • written 7.1 years ago by KNIGHT M.R. • 30
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gravatar for Dannon Baker
7.1 years ago by
Dannon Baker ♦ 3.7k
United States
Dannon Baker ♦ 3.7k wrote:
Hi Marc, Yes, if you change "Bowtie settings to use" from common to full, you'll see the entire parameter list, including "Number of mismatches for SOAP-like alignment policy (-v):" -Dannon
ADD COMMENT • link written 7.1 years ago by Dannon Baker ♦ 3.7k
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