Similar posts • Search »

• Map with Bowtie for Illumina
  Hi All, question about "Map with Bowtie for Illumina" tool, if read maps to multiple locations ...
• Bowtie Reference Genome
  Dear galaxy users, I am trying to map some multiplexing bisulfite PCR data (Illumina) to o...
• Need help with "Map with Bowtie for Illumina" tool
  nothing happened when clicking the input file dropbox, can not upload files.   Tool name: Map ...
• ChIP-seq mapping with Bowtie for Illumina 1.1.2
  Hi, I mapped my chip seq data with 'Map with Bowtie for Illumina 1.1.2' and used 'Filter SAM or ...
• What format of data required for Mapping with Bowtie
      I am a new user of Galaxy. Recently, got some next gen RNAseq data from Illumina single end...
• Bowtie
  Hi Experts, I have single end Illumina reads from ChIP-Seq experiment. The files have encoding I...
• Map With Bowtie Or Tophat?
  Hi all, what is the difference between using "NGS:mapping-------Map with Bowtie for Illumina" and...
• Cannot select the S. cerevisiae reference genome (sacCer3) for "Map with Bowtie for Illumina" in a saved workflow
  I have a saved workflow involving a Map with Bowtie for Illumina step in which I want to map read...
• Change Format With "Edit Attributes"
  Hello, I'm trying to change the format to the output files from Barcode splitter from FASTA to F...
• Re: Output File For Bowtie Suppressed Reads (-M/--Max)
  Hi all, I'm running into a problem with the output from bowtie mapping for illumina reads. I'v...
• uploaded FASTQ not showning in the pulldown menu
  Hi,   I FTPed .fastq.gz files to Galaxy server and uploaded to Galaxy (appear in the history me...
• SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local Galaxy instance
  Hi, I'm trying to run a workflow on a local Galaxy instance that has these steps in the beginnin...
• Multiple alignment for fastq files from illumina
  Can I make a multiple alignment in Galaxy with fastq data from illumina? Clustal tool only takes...
• Bwa Errors
  Hi, Two related issues: We tried to run BWA for Illumina on two groomed files (fastqsanger)...
• Bowtie trouble for aligning small RNA reads
  Hi there, I’ve been trying to use Bowtie to align my small RNA NGS reads (fastq groomed, for San...
• Need help with "Map with Bowtie for Illumina" tool
  Hi, I mapped my illumina sequences with one reference bacterial genome and got bam file. Does any...
• Map With Bowtie
  Hi Colleagues, I mapped illumina sequences using Bowtie on Galaxy server, I could not locate the ...
• Map With Bowtie For Illumina (Version 1.1.2)
  Hi, I'm trying to assemble Illumina paired sequence which is at least 15x deep to the Arabidopsis...
• Need help with "Map with Bowtie for Illumina" tool - Methanosarcina acetivorans
  Hi there,  Would it be able to include "Methanosarcina acetivorans C2A" in the Reference Genome ...
• User Reference Vs. Built-In Index
  Hi. I created a workflow to map IGA reads using bowtie and generate a pileup at the end. The work...
• use bowtie for illumina with phred33?
  Hi, I am a newbie on this field. I am using usegalaxy.org tools, and bowtie for aligning sequence...