Question: What format of data required for Mapping with Bowtie
gravatar for msalehin
3.3 years ago by
United States
msalehin0 wrote:



I am a new user of Galaxy. Recently, got some next gen RNAseq data from Illumina single end short read. They are FASTQ files. So, I was trying to assemble the reads with Bowtie or BWA and check differential expression with Cuffdiff. But failed to run the data after loading the FASTQ files in history.What format of data is required for Mapping with Bowtie?



rna-seq bowtie galaxy • 775 views
ADD COMMENTlink modified 3.3 years ago by Jennifer Hillman Jackson25k • written 3.3 years ago by msalehin0
gravatar for Jennifer Hillman Jackson
3.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Please see section 2.11 of the Support wiki for details about how to format and label Fastq datasets for use in Galaxy:

Best, Jen, Galaxy team

ADD COMMENTlink written 3.3 years ago by Jennifer Hillman Jackson25k
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