Question: what does unavailable mean?
1
gravatar for hzhu04
27 days ago by
hzhu0410
hzhu0410 wrote:

Hi, I am trying to use the "Extract Genomic DNA" tool however it needs TAB delimited so I am trying to change my Gene base file to TAB but whenever i try to load the file to "Convert" it says "(unavailable)" followed by the file name. What am I doing wrong or how am I suppose to do this?

alignment • 68 views
ADD COMMENTlink written 27 days ago by hzhu0410
0
gravatar for Jennifer Hillman Jackson
27 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This is most likely related to current server issues undergoing correction: https://biostar.usegalaxy.org/p/29474/

Distinct from that, this tool's input needs to be in BED format, assigned that datatype, be active (not deleted), and assigned the target genome/build (even if a custom build). Not all genomes are indexed for this tool.

More feedback/advice once the primary server issues are resolved.

Thanks! Jen, Galaxy team

ADD COMMENTlink modified 27 days ago • written 27 days ago by Jennifer Hillman Jackson25k

The server issues are now resolved.

If you are still having a problem, double check that the "database" metadata is assigned and that the data is in BED format. If your genome is not indexed on the server, the tool will note it as being "unavailable".

Two choices from there:

ADD REPLYlink written 27 days ago by Jennifer Hillman Jackson25k
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