Question: alignseq_seq.loc file missing
gravatar for lachlan.simpson
11 weeks ago by
lachlan.simpson20 wrote:


I've got an error in my data tables page saying alignseq_seq.loc is missing.

alignseq.loc and alignseq.loc.sample exist.

Am I missing something or has there been an error in the naming of the file/calling of the file?

I've seen this in both 17.09 and 18.05

twobit data tables • 84 views
ADD COMMENTlink modified 11 weeks ago by Jennifer Hillman Jackson25k • written 11 weeks ago by lachlan.simpson20
gravatar for Jennifer Hillman Jackson
11 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


When creating .2bit indexes, the DM created table's file path is nested and will be a path like this one:


It is possible to configure the data tables/paths to point to multiple location (".loc") files for a particular index type. The configuration files involved are covered in the Galaxy Admin docs here: with training available here:

Mixed data sources require a more complex configuration. Galaxy Main ( has a mix of DM and legacy data. How we configure is public and described here as an example:

That said, if you think there is a bug somewhere, please vet it with the Galaxy development community at Gitter They'll want more details about your configuration and methods (are you using Data Managers? Ephemeris? CVMFS? Your own legacy data? A mix of sources?).

Thanks! Jen, Galaxy team

ADD COMMENTlink written 11 weeks ago by Jennifer Hillman Jackson25k
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