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• Tool errors with private instance of Galaxy on Jetstream
  Hello community, I manage a NGS core lab and also teach a grad level intro to Bioinformatics cou...
• cutadapt custom file
  Hello, I'm working on a cloud instance of galaxy and we have installed cutadapt from the tool sh...
• Help On Installing Cutadapt
  Hi Galaxy users, I tried to install cutadapt for sequence trimming on a local Galaxy instance. I...
• PAUSE 3 results not displaying
  Hello, I'm quite new to Galaxy and I have been looking around the tutorials to try and find an a...
• Cloud Instance Of Galaxy
  I have put up an instance of galaxy on the cloud and as a simple test am trying to retrieve hg19 ...
• How to Obtain Reads After Using CutAdapt Tool
  Hello! I am trying to analyze the sample reads after using the cutadapt tool, but cannot find th...
• Many errors on install : Zlib, Samtools, cutadapt, galaxy utils
  Hello everyone, I have many errors when I try to install some tools from the toolshed. Some of t...
• Launch a Galaxy Cloud Instance Bad Request
  Hi all, When I tried to copy my Amazon access key ID and secret access key to create a new cloud...
• Failed: internal server error(500)
  I am trying to upload fastq files into galaxy from a galaxy user account from galaxy directly (no...
• Galaxy fatal error running Cutadapt
  Hi, I manage our private instance of Galaxy on Jetstream. I am having all kinds of issues instal...
• Using module system with Galaxy
  Hi. I have a local installation of Galaxy on our server. The server has a module system with loa...
• bam_index_build2() not yet implemented exception on local Galaxy instance - sam-to-bam
  Hi, I'm trying to run a basic workflow consisting of just Map with Bowtie for Illumina, Filter S...
• Accessing bam file in history for visualization through Galaxy API
  My goal is to use a JSON file (which is a product of a lab implemented pipeline ran on galaxy) fo...
• Runtime On Public Galaxy And Current Version Of Galaxy On The Cloud?
  Hi, I am finding that the run time on the public galaxy is exceptionally long, with job submitted...
• Galaxy Docker not starting
  This just started happening today out of nowhere. I had a Galaxy Docker instance running fine for...
• How to restart a previous Cloudman instance
  Hi, I am trying to start a galaxy instance in the cloud using AWS. I managed to follow instructi...
• FastQC data loading error
  I have tried for a few days now for an assignment, but I cannot view the data from FastQCs. It sa...
• Internal Server Error when running workflow (cuffmerge)
  Hi, I am using the main instance of galaxy (usegalaxy.org) and I am trying to run a workflow tha...