11 weeks ago by
When creating .2bit indexes, the DM created table's file path is nested and will be a path like this one:
It is possible to configure the data tables/paths to point to multiple location (".loc") files for a particular index type. The configuration files involved are covered in the Galaxy Admin docs here: https://docs.galaxyproject.org/en/master/admin/config.html?highlight=data%20managers with training available here: https://github.com/galaxyproject/dagobah-training/tree/master.
Mixed data sources require a more complex configuration. Galaxy Main (https://usegalaxy.org) has a mix of DM and legacy data. How we configure is public and described here as an example: https://github.com/galaxyproject/usegalaxy-playbook/wiki/Publishing-Indexes-to-Main
That said, if you think there is a bug somewhere, please vet it with the Galaxy development community at Gitter https://gitter.im/galaxyproject/Lobby. They'll want more details about your configuration and methods (are you using Data Managers? Ephemeris? CVMFS? Your own legacy data? A mix of sources?).
Thanks! Jen, Galaxy team