Question: cufflinks in Galaxy
gravatar for garentguuu
5 months ago by
garentguuu10 wrote:


Recently, I tried to use cufflinks in Galaxy. However, it is running several days and never finished. Because I had used cufflinks before in Galaxy, it run no more than one days. Then I checked my bam file, it is only 2 G. Anyone knows what's the problem of cufflinks in Galaxy?

Thank you!

rna-seq cufflinks galaxy • 209 views
ADD COMMENTlink modified 5 months ago by Jennifer Hillman Jackson25k • written 5 months ago by garentguuu10
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson25k wrote:


I didn't find any queued Cufflinks jobs in your history, all appear completed.

Jobs can run longer than expected when there are problems with the inputs or the settings are made in a way that creates a longer-running job. If you want to double check that inputs are not a problem, the troubleshooting FAQ can help. For help with general Cufflinks help/options, please see the tool manual. I should also point out that this tool is considered deprecated by many in favor of more current RNA-seq methods, those are covered in the Galaxy Tutorials.


Thanks! Jen, Galaxy team

ADD COMMENTlink written 5 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour