Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Dataset generation errors while running Bowtie these days
1
gravatar for apengood
2.0 years ago by
apengood • 20
apengood • 20 wrote:

Dear Galaxy,

I found from two days ago, when I used Bowtie to map my RNAseq data, it either showed error messages, Or even it was run, the read mapped to the reference was incorrect (checked using IdxStats). I realized that is because these two days, I re-run the same samples that I ran before and it gave me the different outcome in terms of mapping rate. Thanks,
bowtie • 525 views
ADD COMMENT • link •
modified 2.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.0 years ago by apengood • 20
1
gravatar for Jennifer Hillman Jackson
2.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

There are some issues with Galaxy Main at http://usegalaxy.org. Please follow here for details and updates: https://biostar.usegalaxy.org/p/20698/

This error may have been due to recent server issues. Once resolved, rerun the job to eliminate that cause. If it fails again, we can help examine job runs to see what the root cause is. I have never seen this particular issue come up before and it would be good to correct if there is a true tool problem. If you submit a bug report, please include a link to this post. https://wiki.galaxyproject.org/Support#Reporting_tool_errors

Thanks for posting about the problem, Jen, Galaxy team
ADD COMMENT • link written 2.0 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour