I'm having issues running TopHat, Cufflinks, and Cuffdiff. The jobs stay grey (with exclamation points) for an astronomical amount of time. Is this normal? I've run all of these RNA-seq tools before and they run in a reasonable amount of time. Could this be an issue with the main galaxy server? If so how quickly will changes be made. I have a final project due for a class in the next 5 days and I need my outputs fairly soon.
Thank you for all the help.