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  Hi I will use galaxy for RNA-seq analysis I start to upload the raw data FatQ file I will reach t...
• Normalization of RNA-seq data
  Hi, I am wanting to normalize my RNA-seq data without running a differential gene expression on...
• Uploading Genome From Ensembl
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  Galaxy upload RNA-seq data（.gz） need to extract it？ How to extract RNA-seq data（.gz）？ Thanks!
• How to create GFF file for HT seq
  Hello there, I am dealing with some RNA seq data and was trying to run the raw data in bam file f...
• RNA-Seq raw count data analysis using GALAXY
  Hi, I have downloaded the raw_readcounts files (.txt files) from an RNA-Seq experiment using GSE ...
• No ht-seq in main Galaxy menu?
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• Bowtie Raw Input
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• Disk space needed for TopHat2
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• Tophat Results
  Dear galaxy users, I aligned my RNA-seq data by using Tophat in galaxy. It generated some "...
• Why can't I view the FastQC Read Quality report in my analyze data section on usegalaxy.org?
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• HTSEQ count error
  Hello, This is my first rna-seq data analysis project and I am using Galaxy to analyze different...
• Pre-Processing Of Illumina Rna-Seq Paired End Data
  Hello, I have Illumina 76bp paired end data for a zebrafish RNA-seq experiment and am basically ...
• NGS Qc: MultiQC not recognizing FASTQC raw results from list
  Hi, I am trying to aggregate results from FAST Qc lists by MultiQC, but MUltiQC isnt recognizing...
• Raw Count Of Genes
  Dear all, I am a Phd student working on chicken genomics, with limited experience in the bio-inf...
• Query Regarding Rna-Seq Data Analysis
  Hi, I am having a fastq file for my RNA data analysis in my computer. How to make it available f...
• Need help with "FastQC:Read QC" tool
  I have collected the raw data for my RNA-seq project. This dataset includes short DNA sequences o...
• Analysis workflow of miRNA-seq data
  I'm looking to analyse RNA-Seq data from miRNA. How similar is the workflow to RNA-seq analysis?
• Creating Heatmap from RNA-seq
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• What to do with Cuffquant .cxb files
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• Fastq To Fastqsanger Using Groomer Question
  Hello! I am fairly new to using Galaxy and have a question about the FASTQ Groom...