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• How to get sequence for a single gene from an RNA Seq file?
  Is there a way to extract the sequence data for a single gene from a RNA Seq1 data file?
• How to extract genes.gtf file from uncompressed gz file
  Hi, I am trying to use the DanRer10 UCSC zebrafish genome file found on the illumina website und...
• Get Data Through Ftp Site
  Hello, I uploaded (on Oct, 25) data through FTP site and I was not able to retreiven them to in...
• RIP-SEQ or RNA-SEQ
  Hello, I am new to galaxy as well as RNA seq analysis. Although, I did not perform RNA seq, I am...
• Trimmomatic output after filtering paired end data - fastqsanger vs fastqsanger.gz
  After running Trimmomatic on a paired end PolyA RNA-seq dataset where both forward and reverse re...
• how to extracts mRNA sequences with different Poly(A)tail lengths from RNA seq data
  I am trying to compare poly(A) tail length of mRNAs in cells with different condition both at glo...
• Use of slice to estimate rpkm/fpkm
  When estimating transcript levels from RNA Seq data that have been normalized using rpkm or fpkm,...
• Creating Heatmap from RNA-seq
  How to create a heatmap using RNA-Seq data? We analyze the RNA-seq using Tophat-Cufflink-Cuffdiff...
• Query Regarding Rna-Seq Data Analysis
  Hi, I am having a fastq file for my RNA data analysis in my computer. How to make it available f...
• Analysis workflow of miRNA-seq data
  I'm looking to analyse RNA-Seq data from miRNA. How similar is the workflow to RNA-seq analysis?
• How To Add Alignment To The Maf
  Hi galaxy, I'm trying to know the coding potential of my RNA-seq transcripts by phylogeny analys...
• RNA-seq raw data of zebrafish
  Hello! I need RNA-seq raw data of tumors in zebrafish for a PhD job, does anyone knows an useful...
• RNA seq data analysis help
  How to perform RNA seq data analysis? Does anyone has experience in analyzing data with this soft...
• RNA-star mapped.bam problems
  I'm trying to use RNA-star but keep getting the following error message "An error occurred setti...
• Finding gene names from TopHat results.
  Hello, I am trying a build a workflow for RNA-Seq analysis and I want to verify my methods via co...
• Uploading Gz Files
  I am unable to load the raw alignment data from the broad institute datasets available from the u...
• iGenomes UCSC hg38 annotation gtf file
  Dear community, I have been analysing rna-seq data using Tuxedo on galaxy. I download the iGeno...
• cuffdiff output to gene enrichment analysis
  Hi all, I successfully ran my RNA-seq data through the entire tuxedo suite on galaxy. I would li...