I am trying to upload .RAW data from Proteome Exchange onto Galaxy Europe where there's Peptide Shaker. Is there a way to do a site-to-site transfer (FXP)? It doesn't seem to be accepting my transfer from the FTP site.
Thanks for any help.
I think Main Galaxy has no FXP setup, FTP is the preferred way. Alternatively you can make Galaxy download a reachable file through http or use Galaxy's API and upload using a script.