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Question: Tophat2 (Version 0.6)
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gravatar for Roberta Galletti
5.1 years ago by
Roberta Galletti • 10
Roberta Galletti • 10 wrote:
Is there any chance to have the Arabidopsis genome put in the sliding menu of the Tophat2 (version 0.6)? Thank you Roberta Galletti
rna-seq tophat • 766 views
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modified 5.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.1 years ago by Roberta Galletti • 10
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gravatar for Jennifer Hillman Jackson
5.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Roberta, We are in the process of adding more genomes indexed for this tool and I can make sure that the latest Arabidopsis builds are there. But you don't need to wait, you can use a custom reference genome with the tool right now (this genome should be small enough). Here is how: http://wiki.galaxyproject.org/Support#Custom_reference_genome Best, Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org
ADD COMMENT • link written 5.1 years ago by Jennifer Hillman Jackson ♦ 25k
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