Question: Arabidopsis Tair9 Genome In Galaxy?
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Loraine, Ann • 150 wrote:
Hello,
Please the TAIR9 genome to Galaxy next-gen tools for use with BowTie.
I made a "fasta" file you could use for this - it's here:
http://www.bioviz.org/quickload/A_thaliana_Jun_2009/for_galaxy_team/A_
thaliana_Jun_2009.fa.gz
The genome version should be called:
A_thaliana_Jun_2009 or TAIR9
for best compatibility with Integrated Genome Browser
www.bioviz.org/igb)
Arabidopsis researchers (and many others!) use IGB to visualize tiling
array results, annotations, EST alignments, Illumina short read
alignments, and various other types of data.
The genome file is from the Arabidopsis Information Resource. If you
need to contact them about this, just write to
curator@arabidopsis.org.
Thank you and very best wishes!
Ann Loraine
____________________
Ann Loraine
Associate Professor
Dept. of Bioinformatics and Genomics, UNCC
North Carolina Research Campus
600 Laureate Way
Kannapolis, NC 28081
704-250-5750
www.transvar.org