Question: No reference genomes on galaxy hisat2
0
gravatar for pwambui
2.6 years ago by
pwambui0
pwambui0 wrote:

I am trying to do rnaseq analysis but galaxy doesn't seem to have any reference genomes on hisat2 loading like it used to have on tophat. What is the problem?

rna-seq • 906 views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by pwambui0
0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Native reference genomes are pending for this tool. Details here: https://github.com/galaxyproject/galaxy/issues/1470

Meanwhile, a Custom reference genome can be used: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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