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• What kind of format does MACS run?
  I download a file on the Gene Expression Omnibus that is in "tar." format, how could I make it ru...
• MACS output files
  First time I have run MACS using Galaxy. I tried to DL the MACS paper from the web site but the...
• History not found when logged in
  I am using galaxy to analyze ChIP-seq. I created log in account. I could see Bam and Bigwig file ...
• Annotating ChIP seq peaks in Galaxy
  I'm analyzing ChIP seq data using Bowtie and then MACS with the Galaxy web instance, and now want...
• MACS2 not working on bam files - possible error with alignment?
  Hi all, I have successfully called peaks on my bam files using earlier versions of MACS, however...
• Why isn't my .bed file being read as an ASCII file?
  I just ran MACS peak calling on a bedgraph file, so I've got output as txt.bed I did this for 6 ...
• MACS and BDGdiff
  Hi, I run MACS2 with broad and paired-end settings, but it did not produced any lambda files whi...
• Galaxy problems plus tech info
  Dear Office, my user is fradiancona@yahoo.it I uploaded library files in Galaxy (fastq.gz files)...
• Help! Galaxy MACS Peak Calling-
  Hi I have aligned my ChIP-Seq and Input to genome and created SAM files. I tried to do peak call...
• unable to load bed files on Mac OC
  I cant load bed file on my Mac though it is quickely done on other computers. How can I troublesh...
• Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
  hi, i wanted to post about something i found out today working with the MACS tool (under NGS: pe...
• Error Message with Galaxy Main Diffbind
  I know a similar problem has been posted before, but I could not comment on the original post: I...
• Mac coding environment / Run Planemo and Galaxy under Linux...(Docker?)
  Hi! I am writing tools and workflows for Galaxy. I am under a Mac OSX. I found it quite challen...
• Peak-Calling With Macs From .Bowtie File
  Hi, I have ChIP-seq alignment files in .bowtie format and would like to perform peak-calling usi...
• Problems with MACS peak calling--FDRs of 100%
  Hello, I am having some issues with MACS peak calling. I have 5 files in my ChIP-Seq dataset (in...
• Mac Installation Help
  Hi, I'm working for Dr. Richard McCombie in Cold Spring Harbor Laboratory. I have tried to ins...
• MACS shows error for MEDIP Seq Data
  Dear sir, I tried to do peak calling for Medipseq Data using MACS. i have done mapping using Bo...
• How to Intersect Replicates in ChIPseq workflow
  Hello, I have some ChIPseq data but I do not know how to write/use code so I am trying to build ...
• Multiple Intersect in ChIPseq analysis
  Hello, I have some ChIPseq data but I do not know how to write/use code so I am trying to build ...
• Multiple Outputs
  Hi all, I would like to integrate some NGS tools in a local instance of galaxy (namely MACS, maq ...
• Macs On Galaxy Not Responding
  Dear Galaxy, I have been trying to run MACS since the past two days but in vain. Could you kindl...