Question: Galaxy problems plus tech info
gravatar for fradiancona
2.7 years ago by
fradiancona20 wrote:

Dear Office, my user is

I uploaded library files in Galaxy (fastq.gz files). After that I performed FASTQ Groomer, Trimmomatic, Bowtie2, Filter SAM or BAM, output SAM or BAM, MACS and intersect analysis.

At first I performed nice analysis. However, these last two days the online software is not working and I have bowtie analysis still running. Are there problems?

After that I have a technical question: My samples have been read by Illumina platform 12 million times. Now I would like to compare results obtained from these reads to other obtained from half reads. Which is the tool or application by which I could perform my analysis in 6 million of reads?

Thank you very much Happy Easter

Dr. Francesco Piacenza

alignment galaxy • 653 views
ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by fradiancona20
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


There were issues with the public Main Galaxy instance at that now should be resolved. There is a bit of a job backup, resulting in longer queue times, but this is getting better. Allow grey (queued) jobs to run without deleting/restarting and re-run any that failed.

For the second part, could you explain the analysis goal in more detail?

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson25k
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