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Question: Galaxy problems plus tech info
1
gravatar for fradiancona
2.7 years ago by
fradiancona • 20
fradiancona • 20 wrote:

Dear Office, my user is fradiancona@yahoo.it

I uploaded library files in Galaxy (fastq.gz files). After that I performed FASTQ Groomer, Trimmomatic, Bowtie2, Filter SAM or BAM, output SAM or BAM, MACS and intersect analysis.

At first I performed nice analysis. However, these last two days the online software is not working and I have bowtie analysis still running. Are there problems?

After that I have a technical question: My samples have been read by Illumina platform 12 million times. Now I would like to compare results obtained from these reads to other obtained from half reads. Which is the tool or application by which I could perform my analysis in 6 million of reads?

Thank you very much Happy Easter

Dr. Francesco Piacenza
alignment galaxy • 653 views
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modified 2.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.7 years ago by fradiancona • 20
0
gravatar for Jennifer Hillman Jackson
2.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

There were issues with the public Main Galaxy instance at http://usegalaxy.org that now should be resolved. There is a bit of a job backup, resulting in longer queue times, but this is getting better. Allow grey (queued) jobs to run without deleting/restarting and re-run any that failed.

For the second part, could you explain the analysis goal in more detail?

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.7 years ago by Jennifer Hillman Jackson ♦ 25k
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