Question: Error Message with Galaxy Main Diffbind
gravatar for james.davison
2.6 years ago by
james.davison0 wrote:

I know a similar problem has been posted before, but I could not comment on the original post:

I have been getting the following error message while trying to use the Diffbind program on Galaxy Main:

"WARNING: ignoring environment value of R_HOME [1] "en_US.UTF-8" Loading required package: GenomicRanges Loading required package: methods Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The fo"

I have been using 2 BAM files and 1 BED file per condition for the input (BED file is the Peak File). I have tried using BED files from both "MACS" and "MACS2 peakcall" programs. The output files are always empty and have the same error message.

Any Ideas what I am doing wrong?

Thanks for your help, Jim

diffbind chip-seq • 851 views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by james.davison0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Thanks for reporting the problem with Diffbind. Please see: DiffBind issues on Galaxy

Best, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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