Since 23 Feb I cannot view my VCF files on the UCSC Genome Browser. When I click on the Main link the browser opens, but the user track just shows the address of the link (http...) and not the variants. This problem only happens when I try to load my previous VCF files (1-3 weeks old). The files themselves are fine, since they can be displayed properly when I use them out of Galaxy.
The issues with VCF display in a couple of external applications have been ticketed as problems. These include UCSC, IOBIO, and a local IGV. The workaround, for now, is to download the VCF data with display problems and load them directly into the external applications.
Thanks for reporting the problem! Jen, Galaxy team