Question: UCSC Genome Browser not loading VCF files
9 months ago by
ajimenez • 0
ajimenez • 0 wrote:
Since 23 Feb I cannot view my VCF files on the UCSC Genome Browser. When I click on the Main link the browser opens, but the user track just shows the address of the link (http...) and not the variants. This problem only happens when I try to load my previous VCF files (1-3 weeks old). The files themselves are fine, since they can be displayed properly when I use them out of Galaxy.
ADD COMMENT • link •modified 6 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by ajimenez • 0
Hi - I am doing some testing. More feedback soon and thanks for reporting the problem. Jen, Galaxy team
Today I have checked the VCF files again and one of them (produced with snpEff) has worked fine after been reloaded by the browser. The other two VCF files (produced with Varscan and Freebayes) still do not work and just show the link (http...).