I am trying to visualize the Wiggle, bedgraph or bam files from Galaxy to the UCSC browser directly. the BED files are working fine. Any idea about this ?
Hello,
Is the database attribute assigned? Click on then pencil icon per-dataset to do this. It must be a match for a UCSC hosted genome browser.
Also be sure to use this tool to compress before visualization: Wig/BedGraph-to-bigWig converter
Share more about the behavior seen if this does not resolve the issue.
Thanks, Jen, Galaxy team
Hi Jen,
Yes its assigned. When I am trying to view using display at 'UCSC main test' it says 'byte-range request was ignored by server'
I am trying it from the Galaxy/Cistrome
track load error (track name='ct_Uk5hmC_7783'):
ERROR: wigEncode: empty input file: 'stdin'
SM
If bigWig files are being denied at http://genome.ucsc.edu, I would contact the Cistrome server's admins and see if there is a connection problem. They can help sort out if the issue is with UCSC or on their side. Contact info is here: https://wiki.galaxyproject.org/PublicGalaxyServers
