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Question: Software Request
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gravatar for Christopher Balakrishnan
7.5 years ago by
Christopher Balakrishnan • 10
Christopher Balakrishnan • 10 wrote:
Hi there, I noticed on Seqanswers there was a post inquiring about the potential addition of DE-Seq (Anders & Huber) to the growing stack of tools available in galaxy. I for one would love to see this integrated. I typically use it in combination with HT-Seq, a set of python scripts also from Simon Anders. This simply has the functionality of converting a SAM alignment to simple counts of reads per transcript across the genome. Probably there are tools is Galaxy that do a similar thing. In any case I think many people are using TopHat -> HT- Seq -> DE-Seq for analysis of RNAseq data so it would be great if DE- Seq were supported in Galaxy My two cents.. Thanks for all your great work! Chris Christopher Balakrishnan Institute for Genomic Biology University of Illinois 1206 W. Gregory Drive MC-195 Urbana, IL 61801 phone: 617-905-2910 http://myweb.ecu.edu/balakrishnanc
galaxy • 743 views
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modified 7.5 years ago by Philippe Lefebvre • 10 • written 7.5 years ago by Christopher Balakrishnan • 10
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gravatar for Philippe Lefebvre
7.5 years ago by
Philippe Lefebvre • 10
Philippe Lefebvre • 10 wrote:
Hi Chris You may find DESeq at the Galaxy website http://galaxy.fml.mpg.de/ Le 14/06/2011 19:28, Christopher Balakrishnan a écrit : -- Best regards/Cordialement __________________________ Philippe Lefebvre, Ph.D. Directeur de Recherche INSERM INSERM UMR 1011-Bâtiment J&K Université Lille-Nord de France; Faculté de Médecine de Lille-Pôle Recherche Boulevard du Professeur Leclerc 59045 Lille cedex France Tel +33.3.20974220 Cell. Phone +33.6.87829495 Fax +33.3.20974201 This e-mail, including any attachments, may contain information that is protected by law as privileged and confidential, and is transmitted for the sole use of the intended recipient. If you are not the intended recipient, you are hereby notified that any use, dissemination, copying or retention of this e-mail or the information contained herein is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender by telephone or reply e-mail, and permanently delete this e-mail from your computer system. Thank you
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