Question: Comparing two datasets with a custom genome
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lhorb • 0 wrote:
I have an ran seq experiment -paired end, 100 bp, where I am trying to compare control vs test samples. I am using a Xenopus Laevis genome (Xenbase v9.1) which I uploaded via FTP. I uploaded the data sets, trimmed them and then aligned them with TOPHAT tool to my 'custom genome from history'.
When I took the course, at this point we looked at the data but we were using a human genome that was available and there was a link in the TOPHAT accepted hits to USCU main. My genome is not there so there is no such link and now I'm lost. I would just like to compare the data sets to see if there is anything in the test which is not in the control. Thank you
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modified 3.1 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
3.2 years ago by
lhorb • 0
