Question: Galaxy Tool Error Report From Johnwu@Ibms.Sinica.Edu.Tw
7.5 years ago by
email@example.com • 10 wrote:
GALAXY TOOL ERROR REPORT This error report was sent from the Galaxy instance hosted on the server "192.168.0.36:8080" This is in reference to dataset id 377 from history id 2 You should be able to view the history containing the related history item 176: Cuffcompare on data 175: transcript accuracy by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link. 192.168.0.36:8080/history/view?id=f597429621d6eb2b The user 'firstname.lastname@example.org' provided the following information: While executing cuffcompare, I encountered this error message: Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output' I was practicing RNA-seq analysis steps on newly installed galaxy to test if i could easily analyze my data. I could run cufflinks and cuffdiff through galaxy, but i'm unable to run cuffcompare. how should i solve this problem? thanks a lot! job id: 126 tool id: cuffcompare job command line: python /home/galaxy/software/galaxy_dist/tools/ngs_rna/cuffcompare_wrapper.py -s --ref_file="None" --dbkey=hg19 --index_dir=/home/galaxy/software/galaxy_dist/tool-data /home/galaxy/software/galaxy_dist/database/files/000/dataset_376.dat job stderr: Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output' job stdout: cuffcompare v1.0.3 (2403) cuffcompare -o cc_output -s /home/galaxy/data/galaxy_data/sam_index/hg19.fa ./input1 job info: None job traceback: None (This is an automated message).
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