Question: Galaxy Tool Error Report From Johnwu@Ibms.Sinica.Edu.Tw
gravatar for
7.5 years ago by
GALAXY TOOL ERROR REPORT This error report was sent from the Galaxy instance hosted on the server "" This is in reference to dataset id 377 from history id 2 You should be able to view the history containing the related history item 176: Cuffcompare on data 175: transcript accuracy by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link. The user '' provided the following information: While executing cuffcompare, I encountered this error message: Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output' I was practicing RNA-seq analysis steps on newly installed galaxy to test if i could easily analyze my data. I could run cufflinks and cuffdiff through galaxy, but i'm unable to run cuffcompare. how should i solve this problem? thanks a lot! job id: 126 tool id: cuffcompare job command line: python /home/galaxy/software/galaxy_dist/tools/ngs_rna/ -s --ref_file="None" --dbkey=hg19 --index_dir=/home/galaxy/software/galaxy_dist/tool-data /home/galaxy/software/galaxy_dist/database/files/000/dataset_376.dat job stderr: Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output' job stdout: cuffcompare v1.0.3 (2403) cuffcompare -o cc_output -s /home/galaxy/data/galaxy_data/sam_index/hg19.fa ./input1 job info: None job traceback: None (This is an automated message).
rna-seq cufflinks • 1.1k views
ADD COMMENTlink modified 7.5 years ago by Nate Coraor3.2k • written 7.5 years ago by galaxy-user@lists.bx.psu.edu10
gravatar for Nate Coraor
7.5 years ago by
Nate Coraor3.2k
United States
Nate Coraor3.2k wrote:
Hello, Please don't set your bug report address (error_email_to in universe_wsgi.ini) to the user mailing list. This should be set to a local address at your site. --nate
ADD COMMENTlink written 7.5 years ago by Nate Coraor3.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour