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• Stitching Maf Blocks
  Hi, On the Galaxy website there is a facility in the 'Fetch Alignments' section to 'Stitch MAF b...
• Can't import pandas with python script
  Good morning, I have a python script that I've added to my Galaxy instance. When I try to run it...
• Trouble using interval2maf.py
  Hello, I have installed a copy of the main Galaxy distribution onto my local system - and am cur...
• How to interpret Galaxy Error (OSError: [Errno 16] Device or resource busy)
  I am trying to add a multi sequence alignment tool (PASTA) to my local instance of galaxy. Curren...
• Question About Fastq Groomer
  Hi All, I'm new to NGS analysis, and command line analysis for that matter. (I'm in the process...
• location of tool after installed from toolshed
  Hi, Do you know where I can find the actual script(python) of the tool that I installed from too...
• Is it possible to add custom JavaScript tool in Galaxy
  I'm looking into adding a custom tool into Galaxy that makes a HTTP request to an API end point, ...
• Statistics - Count Tool
  Hello, Is the Count tool, located in the statistics tools in galaxy, available as an independent...
• Purging Datasets Problem
  Hi all. I've been using the instructions here to attempt purging old datasets, but it only gives ...
• Attempting To Use Parallelism In Bwa
  Hi, I am using Python 2.7. I am running with an hg checked out, up to date version of "https://b...
• Upload Custom Tool
  Hello everyone, I have been struggling with a custom tool I have been trying to create for a bit ...
• Galaxy Passing An Incorrect Directory To A Script...
  I'm having a problem with a script in galaxy. In the xml config file for the tool I have an html...
• New Galaxy Install Hangs
  Hi, since two days, when trying a fresh galaxy install it hangs. I don't know if it has to do wit...
• cleanup datasets script python
  Hello, I am trying to run the script cleanup_datasets.py, but I have this error :   (galaxy_en...
• Error With Setuptools Version In Galaxy Installation On Cluster
  Hi, First of all I would like to appreciate the clean and neat documentation written for the Gal...
• DESeq2 file missing
  Hello everyone, I tried to use DESeq2 2015-10-14 (owner iuc) from the toolshed. Unfortunately it...
• DESeq2 ascii codec can't encode character
  Hello everyone, I have this error when I try to use DESeq2 1.8.2 from iuc team : https://gist.g...