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Question: How to fix an error on tool loading?
0
gravatar for msprindzhuk
21 months ago by
msprindzhuk • 50
msprindzhuk • 50 wrote:

How to fix an error on tool loading?

Here it is:

2017-02-23 15:12:51.493790 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: './database/tmp/tmp-toolshed-gmfcraqQgY7/liftOver.loc' 2017-02-22 08:53:19.003426 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: '/home/galaxy/galaxy/tool-data/liftOver.loc' 2017-02-22 08:52:52.884076 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: '/home/galaxy/galaxy/tool-data/liftOver.loc' 2017-02-21 12:09:02.359343 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: '/home/galaxy/galaxy/tool-data/liftOver.loc' 2017-02-21 08:27:44.124642 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: '/home/galaxy/galaxy/tool-data/liftOver.loc'
toolshed installation tools • 496 views
ADD COMMENT • link •
modified 21 months ago by Jennifer Hillman Jackson ♦ 25k • written 21 months ago by msprindzhuk • 50
1

It needs at least one of the aforementioned .loc files.

ADD REPLY • link written 21 months ago by Devon Ryan • 1.9k
0
gravatar for Jennifer Hillman Jackson
21 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Devon is correct. The loc file needs to be populated. See details in this prior post: https://biostar.usegalaxy.org/p/20367/

There is no Data Manager created yet to install liftOver chain files, but you can follow this ticket for updates about that: https://github.com/galaxyproject/galaxy/issues/1904

Thanks, Jen, Galaxy team
ADD COMMENT • link written 21 months ago by Jennifer Hillman Jackson ♦ 25k

thank you, we will tune

ADD REPLY • link modified 21 months ago • written 21 months ago by msprindzhuk • 50
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