Question: Why does this happen (see image)
0
mschmid • 0 wrote:
Sorry, I guess the solution is simple, but did not find out:
It seems that galaxy can not access the output of the applications, but why?
Here some of the errors I get:
For MUMerplot:
rm: cannot remove `out.fplot': No such file or directory rm: cannot remove `out.rplot': No such file or directory
For nucmer DNA MUMerplot:
rm: cannot remove `out.fplot': No such file or directory rm: cannot remove `out.rplot': No such file or directory rm: cannot remove `out.delta': No such file or directory
and additionally:
The tool produced the following additional output:
not exist the req png file!
For prokka I get for every file which is generated this error.
Fatal error: Exit code 2 () sh: 1: cannot open outdir/prokka.gbf: No such file [08:53:49] Could not run command: sed 's/COORDINATES: profile/COORDINATES:profile/' < outdir\/prokka\.gbf > outdir\/prokka\.gbk
I thought that they are somehow related... Or not?
If you click on the bug icon it will give you additional information about the fail. Please share it with us.
As Martin already said, we need more information. My guess is that your dependencies are not installed correctly and your tools do not produce the expected output.