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• VCFFilter 1.0.0 fatal error with FreeBayes VCF input
  When running a vcf file (output was from FreeBayes tool), I am getting the fatal error Fatal...
• vcf filter error
  I am using the shared workflow -hg19-ngs-workflow-bwa-freebayes-annovar in galaxy. I have problem...
• Flexbar-Galaxy, Fatal error: Exit code 1
  Good morning, I have a problem with Galaxy, I had installed Flexbar, on "manage installed tool" ...
• fatal error exit code 1 from Trimmomatic when input fastq data has an incorrect datatype assignment
  trying to run my dataset with trimmomatic I have changed the files to fast-q-sanger, but it isn'...
• Fatal error: Exit code 127 () and conda issue
  Hi, I am trying and use VCF-BEDintersect tool that I have installed through the toolshed. Install...
• Fatal error :Exit code 1
  Am getting the error below with "NSG: Picard:" and am using the tool "fixmate information". What ...
• Error to run Fastqc
  Dear Sir, Fastqc is not run they show the Fatal error: Exit code 1 (). So please help me sir.
• Variant Calling Free Bayes BamLeftAlign
  When trying to run Galaxy on the platform I keep having the same error message when using FreeBay...
• fastqc data Fatal error: Exit code 1 ()
  I have enquired with an error for just to simple run a FASTQC tool in galaxy following is the er...
• Salmon tool error: libgomp.so.1 missing
  I started a salmon job on the main galaxy site and I got the error: Fatal error: Exit code 127 (...
• Fatal error in StringTie
  Dear all I was running StringTie and I got this error message. Fatal error: Exit code ...
• NGS-QC and manipulatrion
  What is the error meaning? Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=...
• picard collectwgsmetrics error
    Hi..I am trying to use the picard collectwgsmetrics on a bam file generated from a whole genom...
• Cufflinks error message
  What does this error message mean? cufflinks v2.2.1 cufflinks -q --no-update-check -I 300000 -F ...
• CummeRbund error Troubleshooting
  Hi I was doing CummeRbund analysis on my RNAseq samples and it shows the following message for so...
• MACS2 Error while running a shared workflow
  Hi, I used a workflow for ChIP seq, " ChIP seq analysis for intersect"; owner: klaourakis, June13...
• Cummerbund isnt working, none of the plots are working
  Hi people, I did the analysis of differential expression with cuffdiff but when I try to plot th...
• Fastq to fasta failure -- truncated uploaded datasets
  fatal error: Exit code 1 () fastq_to_fasta: Error: invalid quality score data on line 4 (...
• JBrowse error - No module named 'Bio'
  I installed jbrowse tool with no problem, but on run it gives: Fatal error: Exit code 1 () ...
• Question: SAM-to-BAM: fatal exit code Error 139
  Dear All, I am analyzing DNAseq data. I obtained a SAM file by using "Map with BWA for Illumina ...