Question: Variant Calling Free Bayes BamLeftAlign
0
gravatar for kry_8
3 months ago by
kry_810
kry_810 wrote:

When trying to run Galaxy on the platform I keep having the same error message when using FreeBayes and BamLeftAlign

Fatal error: Exit code 1 () freebayes: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

Fatal error: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

ADD COMMENTlink modified 3 months ago • written 3 months ago by kry_810
1
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

This is recently discovered problem with the Freebayes tools (this one included) and we are still working on the correction. Please see the issue tracking ticket for the workaround (use an earlier tool version). When the dependencies are fixed, the ticket will be updated/closed out.

https://github.com/galaxyproject/usegalaxy-playbook/issues/79

Thanks for reporting the problem! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson24k
0
gravatar for kry_8
3 months ago by
kry_810
kry_810 wrote:

Thanks!!!! Sorry to be annoying but what about: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

ADD COMMENTlink written 3 months ago by kry_810
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